Age\u27s Effect on Regenerative Capabilities of Myocytes Through Satellite Cell Analysis

The objective of this study was to investigate potential effects aging had on muscle fiber area and satellite cell count in myocytes. This research could help elucidate the detrimental effect age has on regenerative capabilities whether in terms of satellite cell function or satellite cell number. Satellite cells are primarily responsible for generating new muscle tissue after being activated through mechanotransduction of injury. This study utilized immunofluorescence to examine the presence of the PAX7 gene expression, a unique marker of satellite cells, within a 12 month and 18 month old population of mice. The PAX7 marker was co-stained with DAPI to identify nuclei and mark positive satellite cells. Fiber area was calculated with ImageJ image processing, and the satellite cells were counted by hand. The difference in fiber area of the two populations was negligible, but the satellite cell count was shown to be higher in younger populations

The Metric Nearness Problem

Metric nearness refers to the problem of optimally restoring metric properties to distance measurements that happen to be nonmetric due to measurement errors or otherwise. Metric data can be important in various settings, for example, in clustering, classification, metric-based indexing, query processing, and graph theoretic approximation algorithms. This paper formulates and solves the metric nearness problem: Given a set of pairwise dissimilarities, find a “nearest” set of distances that satisfy the properties of a metric—principally the triangle inequality. For solving this problem, the paper develops efficient triangle fixing algorithms that are based on an iterative projection method. An intriguing aspect of the metric nearness problem is that a special case turns out to be equivalent to the all pairs shortest paths problem. The paper exploits this equivalence and develops a new algorithm for the latter problem using a primal-dual method. Applications to graph clustering are provided as an illustration. We include experiments that demonstrate the computational superiority of triangle fixing over general purpose convex programming software. Finally, we conclude by suggesting various useful extensions and generalizations to metric nearness

HYDRA: Hybrid Deep Magnetic Resonance Fingerprinting

Purpose: Magnetic resonance fingerprinting (MRF) methods typically rely on dictio-nary matching to map the temporal MRF signals to quantitative tissue parameters. Such approaches suffer from inherent discretization errors, as well as high computational complexity as the dictionary size grows. To alleviate these issues, we propose a HYbrid Deep magnetic ResonAnce fingerprinting approach, referred to as HYDRA. Methods: HYDRA involves two stages: a model-based signature restoration phase and a learning-based parameter restoration phase. Signal restoration is implemented using low-rank based de-aliasing techniques while parameter restoration is performed using a deep nonlocal residual convolutional neural network. The designed network is trained on synthesized MRF data simulated with the Bloch equations and fast imaging with steady state precession (FISP) sequences. In test mode, it takes a temporal MRF signal as input and produces the corresponding tissue parameters. Results: We validated our approach on both synthetic data and anatomical data generated from a healthy subject. The results demonstrate that, in contrast to conventional dictionary-matching based MRF techniques, our approach significantly improves inference speed by eliminating the time-consuming dictionary matching operation, and alleviates discretization errors by outputting continuous-valued parameters. We further avoid the need to store a large dictionary, thus reducing memory requirements. Conclusions: Our approach demonstrates advantages in terms of inference speed, accuracy and storage requirements over competing MRF method

Sparse nonnegative matrix approximation: new formulations and algorithms

We introduce several new formulations for sparse nonnegative matrix approximation. Subsequently, we solve these formulations by developing generic algorithms. Further, to help selecting a particular sparse formulation, we briefly discuss the interpretation of each formulation. Finally, preliminary experiments are presented to illustrate the behavior of our formulations and algorithms

Scalable Semidefinite Programming using Convex Perturbations

Several important machine learning problems can be modeled and solved via semidefinite programs. Often, researchers invoke off-the-shelf software for the associated optimization, which can be inappropriate for many applications due to computational and storage requirements. In this paper, we introduce the use of convex perturbations for semidefinite programs (SDPs). Using a particular perturbation function, we arrive at an algorithm for SDPs that has several advantages over existing techniques: a) it is simple, requiring only a few lines of MATLAB, b) it is a first-order method which makes it scalable, c) it can easily exploit the structure of a particular SDP to gain efficiency (e.g., when the constraint matrices are low-rank). We demonstrate on several machine learning applications that the proposed algorithm is effective in finding fast approximations to large-scale SDPs

On Security and Sparsity of Linear Classifiers for Adversarial Settings

Machine-learning techniques are widely used in security-related applications, like spam and malware detection. However, in such settings, they have been shown to be vulnerable to adversarial attacks, including the deliberate manipulation of data at test time to evade detection. In this work, we focus on the vulnerability of linear classifiers to evasion attacks. This can be considered a relevant problem, as linear classifiers have been increasingly used in embedded systems and mobile devices for their low processing time and memory requirements. We exploit recent findings in robust optimization to investigate the link between regularization and security of linear classifiers, depending on the type of attack. We also analyze the relationship between the sparsity of feature weights, which is desirable for reducing processing cost, and the security of linear classifiers. We further propose a novel octagonal regularizer that allows us to achieve a proper trade-off between them. Finally, we empirically show how this regularizer can improve classifier security and sparsity in real-world application examples including spam and malware detection

Statistically Motivated Second Order Pooling

Second-order pooling, a.k.a.~bilinear pooling, has proven effective for deep learning based visual recognition. However, the resulting second-order networks yield a final representation that is orders of magnitude larger than that of standard, first-order ones, making them memory-intensive and cumbersome to deploy. Here, we introduce a general, parametric compression strategy that can produce more compact representations than existing compression techniques, yet outperform both compressed and uncompressed second-order models. Our approach is motivated by a statistical analysis of the network's activations, relying on operations that lead to a Gaussian-distributed final representation, as inherently used by first-order deep networks. As evidenced by our experiments, this lets us outperform the state-of-the-art first-order and second-order models on several benchmark recognition datasets.Comment: Accepted to ECCV 2018. Camera ready version. 14 page, 5 figures, 3 table

HIPAD - A Hybrid Interior-Point Alternating Direction algorithm for knowledge-based SVM and feature selection

We consider classification tasks in the regime of scarce labeled training data in high dimensional feature space, where specific expert knowledge is also available. We propose a new hybrid optimization algorithm that solves the elastic-net support vector machine (SVM) through an alternating direction method of multipliers in the first phase, followed by an interior-point method for the classical SVM in the second phase. Both SVM formulations are adapted to knowledge incorporation. Our proposed algorithm addresses the challenges of automatic feature selection, high optimization accuracy, and algorithmic flexibility for taking advantage of prior knowledge. We demonstrate the effectiveness and efficiency of our algorithm and compare it with existing methods on a collection of synthetic and real-world data.Comment: Proceedings of 8th Learning and Intelligent OptimizatioN (LION8) Conference, 201